Publications 2018

Practical lower and upper bounds for the Shortest Linear Superstring

B. Cazaux, S. Juhel, E. Rivals
17th International Symposium on Experimental Algorithms (SEA 2018)
LIPICs series, vol. 103(18), 2018. doi: http://dx.doi.org/10.4230/LIPIcs.SEA.2018.18

Superstrings with multiplicities

B. Cazaux, E. Rivals
29th International Conference Combinatorial Pattern Matching (CPM), July 2--4, 2018, Qingdao, China;
LIPICs series, vol. 105(21), 2018
DOI: http://dx.doi.org/10.4230/LIPIcs.CPM.2018.21

Relationship between superstring and compression measures: new insights on the greedy conjecture

B. Cazaux, E. Rivals
Discrete Applied Mathematics, Volume 245, Pages 59-64 (online 2017), 20 August 2018,
DOI:  http://dx.doi.org/10.1016/j.dam.2017.04.017
HAL: https://hal-lirmm.ccsd.cnrs.fr/lirmm-01617213

Artificial barriers prevent genetic recovery of small isolated populations of a low-mobility freshwater fish.

Coleman RA, Gauffre B, Pavlova A, Beheregaray LB, Kearns J, Lyon J, Sasaki M, Leblois R, Sgro C, Sunnucks P. Heredity (Edinb). 2018 Jan 12. doi: 10.1038/s41437-017-0008-3.
URL: https://www.nature.com/articles/s41437-017-0008-3

Differential long non-coding RNA expression profiles in human oocytes and cumulus cells

Bouckenheimer J, Fauque P, Lecellier CH, Bruno C, Commes T, Lemaître JM, De Vos J, Assou S. Sci Rep. 2018 Feb 2;8(1):2202. doi: 10.1038/s41598-018-20727-0.
URL: https://www.nature.com/articles/s41598-018-20727-0
PDF: https://www.nature.com/articles/s41598-018-20727-0.pdf

AgroPortal: A vocabulary and ontology repository for agronomy

Clement Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzale Yeumo, Vincent Emonet, John Graybeal, Marie-Angélique Laporte, Mark A. Musen, Valeria Pesce and Pierre Larmande. Computers and Electronics in Agriculture, Elsevier, 2018, 144, pp.126-143. Doi:10.1016/j.compag.2017.10.012.

Computational pan-genomics: status, promises and challenges

Marschall T., Marz M., Abeel T., Dijkstra L., Dutilh B. E., Ghaffaari A., Kersey P., Kloosterman W. P., Makinen V., Novak A. M., Paten B., Porubsky D., Rivals E., Alkan C., Baaijens J. A., De Bakker P. I. W., Boeva V., Bonnal R. J. P., Chiaromonte F., Chikhi R., Ciccarelli F. D., Cijvat R., Datema E., Van Duijn C. M., Eichler E. E., Ernst C., Eskin E., Garrison E.,El-Kebir M., Klau G. W., Korbel J. O., Lameijer E-W., Langmead B., Martin M., Medvedev P, Mu J. C., Neerincx P., Ouwens K., Peterlongo P., Pisanti N., Rahmann S., Raphael B., Reinert K., De Ridder D., De Ridder J., Schlesner M., Schulz-Trieglaff O., Sanders A. D., Sheikhizadeh S., Shneider C., Smit S., Valenzuela D., Wang J., Wessels L., Zhang Y., Guryev V., Vandin F., Ye K., Schönhuth A.
Briefings in Bioinformatics, Vol 19(1), p. 118-135, doi: 10.1093/bib/bbw089 2018.
URL : http://dx.doi.org/10.1093/bib/bbw089
PDF : https://academic.oup.com/bib/article-pdf/19/1/118/25406834/bbw089.pdf